Tagged genes

Sequence ID

Flank

Line

Homologue

AccNo

Chromo-
some

1

LB

TT5-16-1

Rice PAC P0433F09

AP002539

1

2

LB

TT11-1-1

Rice PAC P0686C03

AP004761

8

4

Ds3

B1-7C-4

Rice clone OSJNBa0076E06

AC132215

3

5

Ds3

B1-9-1

Rice BAC OSJNBa0015N19

AC126221

3

6

Ds3

B1-9-1

Rice BAC OSJNBa0050H14, OSJNBb0076N15

AC125472, AC126223

3

7

Ds3

B1-9-5

Rice BAC OSJNAa0091P11, OSJNBa0015N19

AC144491, AC126221

3

9

Ds3

B1-9-1

Rice clone OJ1123F12

AC104428

3

10

Ds3

B2-8-12

Rice BAC OJ1343_D04

AP003825

7

11

LB

B1-9-1

Rice clone OJ1607A12 and Rice submergence induced protein

AC105729 and AF068332

3

13

LB

B1-9-5

Rose chloroplast maturase

AB011977

18

Ds3

TT14-1-5-45

Rice BAC OSJNBa0085M22

AC125495 (AK121181)

3

20

LB

B1-7D-6

Rice  clone nbxb0053G13

AC027662

10

24

LB

TT14-2-1-9

Rice BAC OSJNBa0043A12

AL606619

4

34

Ds3

TT14-1-5-47

Rice BAC OSJNBb0063G05

AP003760

1

38

Ds3

TT14-1-5-63

Rice BAC 36I5

AY013245

3

48

Ds3

TT14-2-1-77

Rice BAC OSJNBb0018B10

AC051634

10

49

Ds3

TT14-2-1-77

Rice BAC OSJNBb0043P23, OSJNBb0096M04

AC099324, AC092559

3

61

Ds3

TT14-2-2-73

Rice BAC OSJNBb0076K20

AC134048 (AK107423)

11

63

Ds3

TT14-2-2-87

Rice BAC OSJNBa0008J01

AP005099

7

75

Ds3

TT28-9-1

Rice BAC OJ1159_D09

AP003792

1

76

LB

TT28-11-1

Rice genomic clone OSJNBa0034E23

AC022352

10

78

LB

TT28-17-1

Rice genomic clone OSJNBa0034E23

AC022352

10

81

Ds3

TT16-28-1-2

Rice PAC P0454A11

AP003254

1

82

Ds3

TT14-2-2-100

Rice clone OJ1014_E09

AP003800

7

83

LB

TT14-1-4-91

Rice BAC OSJNBa0043A12

AL606619

4

85

Ds3

TT14-1-4-100

Rice BAC OSJNBb0084L07

AP005179

7

94

Ds3

TT14-1-4-11

Rice BAC B1153F04

AP003414

1

98

Ds3

TT14-1-4-100

Rice BAC OSJNBb0103I08

AL606695

4

99

Ds3

TT5-17-1-9

Rice BAC clone b6015

AL117264

4

101

Ds3

TT6-1-1

Rice PAC P0481E12

AP003076

1

104

Ds3

TT16-28-1-9

Rice  genomic clone P0681F10

AB026295

6

109

Ds3

B2-4A-5-13

Rice BAC OJ1477_F01 and PAC P0047B07, etc

AP003833 and AP005184

7

110

Ds3

B2-4A-5-13

Rice BAC OSJNBa0035J18

AC137070 (AK099837)

3

114

Ds3

B1-3A-1

Rice PAC P0415A04

AP003345

1

117

Ds3

TT14-1-4-86

Rice clone OSJNBa0050N08

AC021891

10

120

Ds3

TT14-1-4-98

Rice PAC P0480C01

AP003453

1

124

Ds3

TT14-1-4-98

Rice BAC OSJNBa0043L24

AL662969

4

125

Ds3

TT14-1-4-98

Rice BAC OSJNBa0070D14, OSJNBb0071K13

AC135242, AC135864

11

139

Ds3

TT15-2-7-41

Rice BAC OSJNBa0016I09

AP003052

1

150

Ds3

TT16-28-1-9

Rice PAC P0443D08

AP003250

1

152

Ds3

TT16-28-1-9

Rice BAC OSJNBb0020O11

AL662998

4

151

Ds3

TT16-28-1-9

rice wall-associated protein kinase mRNA

AF327447

154

Ds3

B2-4A-5-17

Rice BAC OJ1573_A06

AL954852

12

158

Ds3

B2-7A-1-40

Zea mays thiamine biosynthetic enzyme (thi1-1)

U17350,U17351

167

Ds3

B2-8-6

Rice PAC P0415A04, etc

AP003345, etc

1, 10, 6, 4

168

Ds3

B2-8-6

Rice BAC OSJNBb0032K15, etc

AP003710

1,10

169

Ds3

B2-4A-5-15

Rice PAC P0047B07

AP005184

7

173

Ds3

B8-3A-1-101

Rice PAC P0047B07

AP005184

7

177

Ds3

B8-4B-5-97

Rice BAC OJ1112_E08

AP003705

7

181

Ds3

TT15-2-7-6

Rice BAC OSJNBa0093B11

AC024594

10

201

Ds3

B8-4B-2-114

Rice clone nbxb0053G13

AC027662

10

212

Ds3

B8-4B-3-57

Rice ribosomal protein L41

D10406.1

219

Ds3

B8-4D-1-51

Rice BAC OSJNBb0076O03

AP005866

8

225

RB

TT6-1-1

Arabidopsis chromosome 4, monooxygenase 1

AJ007587

282

Ds5

B2-8-6

Rice gypsy-type retrotransposon RIRE8B DNA

AB014741

287

Ds5

B8-4B-2-114

WHE0606_F10_K20ZA wheat ABA-treated embryo cDNA library

BE515854

289

Ds3

B8-4B-5-81

Rice BAC OSJNBb0016G06

AC134238

3

293

Ds3

B8-3A-1-65

Rice panicle at flowering stage, cDNA clone E4481

AP003433, AU172686, etc

304

Ds3

B8-4A-2-44

Rice BAC OSJNBa0059J06

AC123526

11

327

Ds3

B8-4B-3-86

Rice BAC OSJNBb0086I08

AC105746

10

331

Ds3

B2-7A-1-7

Rice PAC P0427D10

AP004272

7

334

Ds3

B2-4A-1-64

Rice PAC P0474F07, P0002F11

AP004695, AP004652

8

341

Ds3

B4-1-1-1-10

Rice PAC P0011H09

AP004260

7

343

Ds3

B4-1-1-1-2

Rice BAC OSJNBa0035I03

AP003019

6

345

Ds3

B4-1-1-1-6

Rice PAC P0015E04

AP002069

6

347

Ds3

B4-1-1-1-3

Rice PAC P0675A05

AP002071

6

355

Ds3

B4-1-1-11-10

Rice BAC OSJNBa0014B15

AP002854

6

357

Ds3

B4-1-1-74-14

Rice clone P0425F02

AP001168

6

358

Ds3

B4-1-1-77-4

Rice PAC P0493G01

AP002914

1

362

Ds3

B2-7A-1-12-1

Rice PAC P0683F02

AP003289

1

1043

Ds3

TT65-75-5-35

Rice BAC OSJNBa0026L12

AC068924

10

1046

Ds3

TT65-75-8-41

Zea mays mRNA CL9021

AY109573

1047

Ds3

TT65-75-8-69

Rice BAC OSJNBa0050H14 & OSJNBb0076N15

AC125472 & AC126223

3

1049

Ds3

TT65-75-3-48

Rice PAC P0421H04

AP003245

1

1065

Ds3

TT65-75-9-46

Rice BAC OSJNBa0050H14 & OSJNBb0076N15

AC125472 & AC126223

3

1066

Ds3

TT65-75-2-118

Rice BAC OJ1118_E12

AP003743

7

1067

Ds3

TT65-75-2-133

Rice BAC OSJNBa0050H14

AC125472 (AK121217 etc)

3

1070

Ds3

TT65-61-2-1

Rice PAC P0435H01
P0435H01

AP003142

1

1069

Ds3

TT65-4-2-1

Rice BAC OSJNBa0042F21

AL731605

4

1072

Ds3

TT65-70-7-24

Rice PAC P0624B04

AP003632 (AK063946)

6

1073

Ds3

TT65-73-2-4

Rice AOX1b and AOX1a genes, BAC  OSJNBa0083N12

AL606683 and AB004813

4

1097

Ds3

B10-58-2-59

Rice PAC P0431B06

AP004774

2

1098

Ds3

B10-58-11-8

Rice PAC P0431B06

AP004774

2

1109

Ds3

TT65-75-2-134

Rice BAC OSJNBa0050H14

AC125472

3

1111

Ds3

TT65-75-2-67

Rice BAC OSJNBa0050H14 & OSJNBb0076N15

AC125472 & AC126223

3

1117

Ds3

TT65-75-2-71

Rice clone OSJNBa0040M05 and OJ1345H02

AC132214 and AC123568

3

1759

LB

TT219-5

Many rice genomic DNA hits

7,1

1119

Ds3

TT65-75-2-71

Rice BAC OSJNBa0050H14

AC125472 (AK121217)

3

1120

Ds3

TT65-75-2-105

Rice clone OSJNBa0061L19

AC090484

3

1129

Ds3

TT65-76-3-208

Rice clone OSJNBb0058P18

AC116426

3

1171

Ds3

B15-5-1-75

Rice BAC B1099D03

AP003431

1

1185

Ds3

B15-5-5-431

Rice BAC OSJNBa0088A01

AL662987

4

1176

Ds3

B15-5-1-161

Rice PAC P0018C10

AP003227

1

1186

Ds3

B15-5-5-435

Rice BAC OJ1297_C09

AP004087

2

1189

Ds3

B15-5-5-446

Rice PAC P0011G08

AP003225

1

1205

Ds3

B15-5-1-470

Rice PACP0019E03

AP004363

1

1215

Ds3

B10-69-104-18

Rice BAC OSJNBa0041F13

AP003708

6

1240

Ds3

TT87-34-1

Rice BAC OSJNBb0085C12 and OSJNBa0053K19

AL606660 and AL606645

4

1250

Ds3

TT65-27-1-2

Rice BAC OSJNBa0083N12

AL606683

4

1255

Ds3

TT65-27-8-7

Rice BAC OSJNBa0032E06

AL663003

1256

Ds3

TT65-26-3-2

Rice BAC OSJNBb0015D13

AL606650 (AK121883)

4

1257

Ds3

TT65-26-3-2

Rice BAC OSJNBa0015N19

AC126221

6

1259

Ds3

TT65-27-8-12

Rice BAC OSJNBa0058K23

AL662970

1263

Ds3

TT65-17-1-17

Rice BAC OSJNAb0072F04

AC122147

1266

Ds3

TT65-41-1-1

Rice PAC P0666E12 & BAC B1053A04

AP005868 & AP005859

2

1271

Ds3

TT87-92-1

Rice BAC OSJNBa0035M09

AL662968

4

1273

Ds3

TT87-34-1

Rice PAC P0003H10 etc

AP000815 etc

1

1281

LB

TT139-4-1

Rice BAC OSJNBb0043C10

AC105733

3

1288

Ds3

TT65-27-8-12

Rice PAC P0504H10 & BAC OSJNBa0083M16

AP002526 & AP003214

1

1291

Ds3

TT65-76-5-6

Rice clone OJ1119_H02

AC097175

5

492

Ds5

B8-4B-5-34-2

Rice alpha-expansin (EXP19) gene

AF394554

498

Ds5

B8-4B-1-15-16

Rice BAC OSJNBa0035H01

AC027037.6

10

500

Ds3

B2-4A-5-7-22

Rice PAC P0476H10

AP004790

2

501

Ds3

B2-4A-5-7-22

Rice PAC P0476H10

AP004790

2

502

Ds3

B2-4A-5-7-22

Rice PAC P0638D12

AP002972

1

516

Ds5

TT14-1-3-5-6-13

Rice BAC clone H0818E11 and  b6015

AL442111 & AL117264

4

518

Ds5

TT16-28-2-1-50

Rice clone OJ1345_B12

AC104278

5

520

Ds5

TT16-28-2-8-39

Rice BAC OSJNBb0070O09

AC087412

3

521

Ds3

TT16-28-1-11-33

Rice meiotic protein Dmc1A (DMC1A) gene and DNA for RiLim15

AF265548 and D70898.1

523

Ds3

B8-4B-1-15-21

Rice BAC q3037-207F1

AJ245900.1

4

540

Ds5

B2-4A-5-100

Rice clone OJ1263H11

AC118980

3

541

Ds5

B2-4A-5-5-24

Rice clone OJ1263H11

AC118980

3

543

Ds5

B2-4A-5-12-13

Rice BAC OSJNBa0036M16

AP005103

7

544

Ds5

B8-4B-1-51

Rice PAC P0047B07

AP005184

7

545

Ds5

B2-7A-1-48-4

Rice BAC OSJNBa0053L11

AP005691

2

546

Ds5

TT14-1-3-3-1-7

Rice BAC OSJNBa0070C17

AL731610

4

548

Ds5

TT16-28-2-8-22

Rice BAC B1066G12

AP003201

1

553

Ds3

TT16-28-1-11-33

Rice BAC B1097D05

AP003332

1

558

Ds5

B8-4B-1-44-2

Rice PAC P0450B04

AP004462

8

560

Ds5

B8-4B-1-65-10

Rice drought stress (leaf) cDNA clone NL_4_B12 3'

BI306295

7

561

Ds5

B2-2-11-7

Rice PAC P0018C07 & BAC OSJNBb0063M19;  Rice OsBLE2 gene

AP005182 & AP006460

7

563

Ds5

B8-3-2-3

Rice BAC OSJNBb0108E08

AC113433

3

566

Ds5

B2-7A-1-40-18

Rice BAC OSJNBb0076O03

AP005866

8

574

Ds5

B2-4A-1-132

Rice BAC OSJNBa0017O06

AC136520

5

588

Ds5

B2-4A-5-13-3

Rice PAC P0427D10

AP004272

7

596

Ds3

B8-4B-5-77-7

Rice BAC OJ1112_E08

AP003705

7

599

Ds5

B8-3-2-38

Rice BAC OJ1656_A11

AP003448

1

600

Ds5

B8-3-2-43

Rice BAC OJ1710_H11

AP003846

7

602

Ds5

B8-3-2-192

Wheat pre_anthesis spike cDNA clone WHE2325_G07_M13

BG604988

597

Ds5

B2-2-11-18

Rice mature leaf cDNA clone S21169_1A

AU057121

603

Ds5

B8-3-2-280

Rice BAC OSJNBb0048A17

AC084282

3

604

Ds5

B8-3-2-285

Oryza sativa mRNA for MADS box-like protein

AB003325

605

Ds5

B8-3-2-295
B8-3-2-351

Hordeum vulgare cDNA clone HVSMEk0004I18f

BG414986

606

Ds5

B8-3-2-351
B8-3-2-351

Rice BAC B1063H10

AP005095

8

607

Ds5

B8-3-2-370

Rice PAC P0427D10

AP004272

7

608

Ds5

B8-3-2-444

Rice clone nbeb0040I11, etc

AC087547

10

611

Ds5

B8-3-2-487

Rice BAC B1111C09

AP003204

1

613

Ds5

B2-2-26-383

Rice BAC OSJNBa0013M12

AC082644

3

617

Ds3

B2-2-11-21

maize ubiquitin gene

U29159.1

619

Ds3

B2-2-11-39

Rice PAC P0018C07 & BAC OSJNBb0063M19; Rice OsBLE2 gene

AP005182 & AP006460 & AB072978

7

621

Ds3

B2-2-28-603

Rice BAC B1097D05 and Hordeum vulgare cDNA clone HVSMEg0019L20f

AP003332 and BE456098

1

624

Ds3

B2-2-27-208

Rice PAC P0468H06, etc

AP003075

1

625

Ds3

B2-2-27-235

Rice PAC P0427D10, and Rice OsBLE2 gene

AP004272 and AB072978

7

628

Ds5

B2-2-11-21

Rice clone OSJNBa0081P02

AC107226

3

632

Ds5

B2-2-26-411

Rice PAC P0712G01

AP005463

6

634

Ds5

B2-2-28-607

Rice PAC P0524G08

AP004671

7

639

Ds3

B2-2-11-39

Rice BAC OSJNBa0060O17

AP005167

7

645

Ds3

B2-2-28-594

Rice BAC OSJNBb0011E04 and Sorghum propinquum cDNA FM1_38_C09.b1_A003

AP005443 and BF588145

8

651

Ds3

B2-2-28-654

Rice BAC OJ1340_C08

AP005292

7

657

Ds3

B8-3-2-743

Oryza sativa cultivar Guichao2 RSSG8 mRNA

AY034141.1

666

Ds5

B2-4A-5-12-16

Rice PAC P0496C02 and BAC OJ1477_F01

AP004378 and AP003833

7

667

Ds5

B2-4A-5-12-19

Hordeum vulgare cDNA clone HV_CEb0023M13f

BE559170

673

LB

TT6-57-3

Agrobacterium plasmid pTiChry5 agrocinopine syntha

AF229156

857

Ds3

TT65-75-9-26

Rice BAC OSJNBa0091P11

AC073556

3

861

Ds3

TT65-76-3-30

Rice BAC OSJNBa0050H14

AC125472 (AK121217)

3

865

Ds3

TT65-69-6-70

Rice Expansin 14 and 24

AF394550

876

Ds3

TT65-75-5-46

Rice PAC P0596H10

AP003726

6

884

Ds3

TT65-75-9-6

Rice BAC OSJNBb0099O15

AC118289

5

893

Ds3

TT65-76-3-2

Rice PAC P0414C05 & P0691E09

AP004781 & AP004615

6

899

Ds3

TT65-76-3-27

Rice BAC OJ1276-B06

AP003339

1

905

Ds3

TT65-75-7-76

Rice BAC OSJNAa0091P11 & OSJNBa0015N19

AC144491 & AC126221

3

906

Ds3

TT65-75-7-93

Rice BAC OSJNBa0061L19

AC090484

3

920

LB

TT62-85

Rice BAC OSJNBa0091E23

AP003853

1

921

LB

TT63-54

Rice PAC P0711E10, etc

AP000570, etc

1

925

RB

TT62-85

Rice BAC OSJNBa0040E01

AC079887

3

929

Ds3

TT62-21-1

Rice PAC P0688A04

AP002839

1

931

Ds3

TT63-103-1

Rice PAC P0706B05

AP002482

1

933

Ds3

TT63-126-1

Rice PAC P0678F11

AP003437

1

936

Ds3

TT63-127-1

Rice PAC P0460H02

AP003257

1

950

Ds3

TT65-25-11

Rice BAC OSJNBa0008M17

AL662950

4

952

Ds3

TT65-75-4

Rice alpha-expansin (EXP25) gene

AF394560

953

Ds3

TT65-93-1

Rice BAC OSJNBa0011L07

AL606587

4

957

Ds3

TT65-117-1

Rice BAC OSJNBa0060N03

AL606691

4

961

Ds3

TT65-114-1

Rice BAC OSJNBa0093F12 & OSJNBa0093F12

AL662952 & AL607004

4

964

Ds3

TT65-25-11

Rice BAC OSJNBa0093F12 & OSJNBa0093F12

AL662952 & AL607004

4

966

Ds3

TT76-4-1

Rice BAC OSJNBa0041A02 & OSJNBa0083N12

AL606638 & AL606683

4

967

Ds3

TT76-11-1

Rice BAC OJ1167-G06

AP003817

7

968

Ds3

TT76-23-9

Rice BAC OSJNBa0039G19

AL731589

7

969

Ds3

TT76-10-1

Rice clone OSJNBa0058P12

AC139170

11

978

Ds3

TT76-43-1

Rice BAC OSJNBa0041A02 & OSJNBa0083N12

AL606638 & AL606683

4

982

Ds3

TT65-75-7-75

Rice BAC OSJNBa0090O10

AC134237

7

985

Ds3

TT65-76-3-162

Rice BAC OSJNBa0032G08

AC079633

3

990

Ds3

TT76-42-1

Zea mays PCO104083 mRNA sequence

995

Ds3

TT76-90-2

Rice BAC OSJNBb0091N21

AC091122

10

997

Ds3

TT76-90-3

Rice BAC OSJNBa0043L24

AL662969

4

998

Ds3

TT76-90-3